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Biochemistry Laboratory, Spring 2009
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" The course, which spans two thirds of a semester, provides students with a research-inspired laboratory experience that introduces standard biochemical techniques in the context of investigating a current and exciting research topic, acquired resistance to the cancer drug Gleevec. Techniques include protein expression, purification, and gel analysis, PCR, site-directed mutagenesis, kinase activity assays, and protein structure viewing. This class is part of the new laboratory curriculum in the MIT Department of Chemistry. Undergraduate Research-Inspired Experimental Chemistry Alternatives (URIECA) introduces students to cutting edge research topics in a modular format. Acknowledgments Development of this course was funded through an HHMI Professors grant to Professor Catherine L. Drennan."

Subject:
Chemistry
Physical Science
Material Type:
Full Course
Textbook
Author:
Taylor, Elizabeth Vogel
Date Added:
01/01/2009
Biochemistry and Pharmacology of Synaptic Transmission, Fall 2007
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CC BY-NC-SA
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Considers the process of neurotransmission, especially chemicals used in the brain and elsewhere to carry signals from nerve terminals to the structures they innervate. Focuses on monoamine transmitters (acetylcholine; serotonin; dopamine and norepinephrine); also examines amino acid and peptide transmitters and neuromodulators like adenosine. Macromolecules that mediate neurotransmitter synthesis, release, inactivation, and receptor-mediated actions are discussed, as well as factors that regulate their activity and the second-messenger systems they control.

Subject:
Chemistry
Physical Science
Material Type:
Full Course
Textbook
Author:
Wurtman, Richard
Date Added:
01/01/2007
Biogeochemistry of Sulfur, Fall 2007
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" This course is designed for advanced undergraduate and graduate students with an interest in using primary research literature to discuss and learn about current research around sulfur biogeochemistry and astrobiology."

Subject:
Chemistry
Physical Science
Material Type:
Full Course
Textbook
Author:
Ono, Shuhei
Summons, Roger
Date Added:
01/01/2007
Bioinorganic Chemistry
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Exploration of the biological importance of inorganic complexes. Topics include: biochemistry and transition metal chemistry review, characterization methods, metal ion transport and cellular storage, biological electron transfer, the nitrogen cycle, oxygen transport and transfer, oxygen processing, and enzymes and proteins.

Biological Chemistry
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Chemical Biology research uses the tools of chemistry and synthesis to understand biology and disease pathways at the molecular level. Advanced Biological Chemistry interests include diverse topics such as nucleic acids, DNA repair, bioconjugate chemistry, peptides and peptidomimetics, glycoscience, biomolecular structure and function, imaging, and biological catalysis. Biophysical Chemistry represents the union of Chemistry, Physics, and Biology using a variety of experimental and theoretical approaches to understand the structure and function of biological systems.

Biological Engineering Design, Spring 2010
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This course illustrates how knowledge and principles of biology, biochemistry, and engineering are integrated to create new products for societal benefit. It uses a case study format to examine recently developed products of pharmaceutical and biotechnology industries: how a product evolves from initial idea, through patents, testing, evaluation, production, and marketing. Emphasizes scientific and engineering principles; the responsibility scientists, engineers, and business executives have for the consequences of their technology; and instruction and practice in written and oral communication. The topic focus of this class will vary from year to year. This version looks at inflammation underlying many diseases, specifically its role in cancer, diabetes, and cardiovascular disease.

Author:
White, Forest
Essigmann, John
Irvine, Darrell
Breindel, Harlan
Banuazizi, Atissa
Poe, Mya
Bioorganic Chemistry
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Examination of the biological importance of organic molecules. Topics include: bioorganic mechanisms, chirality and its role in bioactivity, lipids, carbohydrates, animo acids, peptides, and porteins, nucleic acids, enzymes, coenzymes, and coupled reactions, lipid metabolism, carbohydrate metabolism, amino acid metabolism, and nucleotide metabolism.

Birth of a Drug
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The search for new medicinal products is one of the major driving forces behind the development and application of new synthetic methods. This unit focuses on a specific case study, which follows the development of a drug for the treatment of high blood p

Body Full of Crystals
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Students learn about various crystals, such as kidney stones, within the human body. They also learn about how crystals grow and ways to inhibit their growth. They also learn how researchers such as chemical engineers design drugs with the intent to inhibit crystal growth for medical treatment purposes and the factors they face when attempting to implement their designs. A day before presenting this lesson to students, conduct the associated activity, Rock Candy Your Body.

Author:
Andrea Lee, Megan Ketchum
National Science Foundation GK-12 and Research Experience for Teachers (RET) Programs, University of Houston,
Breast Cancer Risk: Using Real Medical Histories to Rank Genetic and Environmental Influences
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This case study takes a combined directed and discussion approach to explore risk factors for breast cancer. After a preparatory reading assignment, students assess various medical histories derived from actual women with breast cancer and rank their overall risk for breast cancer and make recommendations for risk reduction. The task is complicated by the different and often combined sources of risk (e.g., reproductive history, hormone replacement therapy and family history). Originally written for an introductory biology course, the case study could easily be adapted for upper division curses in genetics, physiology, or biochemistry to explore the biological and biochemical basis underlying various risk factors.

Author:
MichĽË_le Shuster
Karen Peterson
Breathing Cells
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Students use a simple pH indicator to measure how much CO2 is produced during respiration, at rest and after exercising. They begin by comparing some common household solutions in order to determine the color change of the indicator. They review the concepts of pH and respiration and extend their knowledge to measuring the effectiveness of bioremediation in the environment.

Author:
Janet Yowell
Malinda Schaefer Zarske
Kaelin Cawley
Integrated Teaching and Learning Program,
Bridging to Polymers: Thermoset Lab
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Students act as engineers to learn about the strengths of various epoxy-amine mixtures and observe the unique characteristics of different mixtures of epoxies and hardeners. Student groups make and optimize thermosets by combining two chemicals in exacting ratios to fabricate the strongest and/or most flexible thermoset possible.

Author:
Don McGowan
Brian Rohde
National Science Foundation GK-12 and Research Experience for Teachers (RET) Programs,
Bubbling Blobs
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This activity is a lab project where students observe what happens when you try to mix oil and water. It can also be used to work with density.

Author:
Brenda Hanssen Halverson Elementary Albert Lea, MN
Hanssen, Brenda
Burning Down the House: A Case Study in Forensic Instrumental Analysis
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In this lab-based case, arson investigator "Marie Stanforth" comes under suspicion when her ex-husband dies in a fire. Students assume the role of forensic chemists working for the FBI to analyze charred samples recovered from the crime scene as well as clothing from the principal suspect, comparing what they find in the samples to accelerant standards whose spectra are already known. Once they have determined whether or not the fire was arson, they must then decide if the allegations against Marie are credible. This case study was designed for an instrumental methods course, but could be adapted for a non-science majors' course.

Author:
Randolph K. Larsen, III
Adam M. Boyd
The Campus Coffee Shop: Caffeine Conundrums
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Since caffeine is a widely used substance, especially by college age students, this case on the effects of caffeine on the human body serves as a real-world connection to many students' lives. The case is divided into sections covering background information on caffeine, cell biology and signal transduction, Parkinson's disease, cardiovascular effects, and addiction/withdrawal. The case was designed so that a section can be used alone or in combination with other sections, as dictated by topic/curriculum needs. It would be appropriate for use in a variety of science and health related courses, including anatomy and physiology, disease related courses, genetics, cell biology, molecular biology, biochemistry, and neuroscience.

Author:
Andrea Novicki
Brian Rybarczyk
Wendy Heck-Grillo
A Can of Bull:  Do Energy Drinks Really Provide a Source of Energy?
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This case study is designed to teach students at various levels about large biomolecules, nutrition, and product analysis. Students conduct a biochemical analysis of several popular energy drinks on the market, which many students purchase at fairly high prices, and determine whether these products nutritionally match their marketing claims. The case can be used as a review of basic biochemistry and nutrition for upper level students in physiology, biochemistry, or nutrition courses, or to introduce this information in introductory level courses in these disciplines.

Author:
Gerald Urquhart
Merle Heidemann
The Car with a Lot of Potential
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Working in teams of three, students perform quantitative observational experiments on the motion of LEGO MINDSTORMS(TM) NXT robotic vehicles powered by the stored potential energy of rubber bands. They experiment with different vehicle modifications (such as wheel type, payload, rubber band type and lubrication) and monitor the effects on vehicle performance. The main point of the activity, however, is for students to understand that through the manipulation of mechanics, a rubber band can be used in a rather non-traditional configuration to power a vehicle. In addition, this activity reinforces the idea that elastic energy can be stored as potential energy.

Author:
Janet Yowell
Malinda Schaefer Zarske
Integrated Teaching and Learning Program,
Daria Kotys-Schwartz
Brian Kay
A Case of Respiratory Distress
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This clinical case study was developed to engage students by making connections between core concepts in chemistry and physiological processes in the body. The case pertains to medication-induced methemoglobinemia, its etiology, diagnosis, and treatments. Concepts taught by the case include the use of conversion factors, pH, buffering, Le Chatelier's principle, blood chemistry, and respiratory and metabolic acidosis and alkalosis. The case is suitable for use in a General, Organic, and Biological (GOB) Chemistry course or other introductory general chemistry course as well as undergraduate physiology courses. The case also could be adapted for use in undergraduate pharmacology and medicinal chemistry courses.

Author:
Brahmadeo Dewprashad
Geraldine S. Vaz
Sharon A. Vaz
The Case of the Missing Bees: High Fructose Corn Syrup and Colony Collapse Disorder
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Colony Collapse Disorder (CCD) has claimed approximately one-third of the commercial honeybee population in recent years. A number of causes have been suggested for this phenomenon, including the consumption of high fructose corn syrup (HFCS) by the bees. This directed case investigates the issues and chemistry that might be involved in CCD related to HFCS. The case was developed for use in an undergraduate organic chemistry or food chemistry course.

Author:
Jeffri C. Bohlscheid
Frank J. Dinan
Catalytic Converter
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This video lesson aims to motivate students about chemistry and to raise their awareness about how chemistry helps in solving certain environmental problems. In this lesson, the air pollution problem created by cars and other vehicles is presented. The lesson will highlight causes of this problem, harmful products from it and possible solutions. There will also be discussion of ways to convert the pollutants produced by burning oil in vehicles into more friendly products.

Author:
Prof. Mohammad El-Khateeb