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Biodomes
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Students explore the biosphere's environments and ecosystems, learning along the way about the plants, animals, resources and natural cycles of our planet. Over the course of lessons 2-6, students use their growing understanding of various environments and the engineering design process to design and create their own model biodome ecosystems - exploring energy and nutrient flows, basic needs of plants and animals, and decomposers. Students learn about food chains and food webs. They are introduced to the roles of the water, carbon and nitrogen cycles. They test the effects of photosynthesis and transpiration. Students are introduced to animal classifications and interactions, including carnivore, herbivore, omnivore, predator and prey. They learn about biomimicry and how engineers often imitate nature in the design of new products. As everyday applications are interwoven into the lessons, students consider why a solid understanding of one's environment and the interdependence within ecosystems can inform the choices we make and the way we engineer our communities.

Author:
Christopher Valenti
Malinda Schaefer Zarske
Denise W. Carlson
Bioinformatics
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This exercise contains two interrelated modules that introduce students to modern biological techniques in the area of Bioinformatics, which is the application of computer technology to the management of biological information. The need for Bioinformatics has arisen from the recent explosion of publicly available genomic information, such as that resulting from the Human Genome Project.

Author:
By Monica Bruckner, Montana State University; Based on the Bioinformatics Exercise by Seth Bordenstein.
Monica Bruckner
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
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Covers the basics of R software and the key capabilities of the Bioconductor project (a widely used open source and open development software project for the analysis and comprehension of data arising from high-throughput experimentation in genomics and molecular biology and rooted in the open source statistical computing environment R), including importation and preprocessing of high-throughput data from microarrays and other platforms. Also introduces statistical concepts and tools necessary to interpret and critically evaluate the bioinformatics and computational biology literature. Includes an overview of of preprocessing and normalization, statistical inference, multiple comparison corrections, Bayesian Inference in the context of multiple comparisons, clustering, and classification/machine learning.

Author:
Irizarry, Rafael
Biological Computing: At the Crossroads of Engineering and Science, Spring 2005
Conditional Remix & Share Permitted
CC BY-NC-SA
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Imagine you are a salesman needing to visit 100 cities connected by a set of roads. Can you do it while stopping in each city only once? Even a supercomputer working at 1 trillion operations per second would take longer than the age of the universe to find a solution when considering each possibility in turn. In 1994, Leonard Adleman published a paper in which he described a solution, using the tools of molecular biology, for a smaller 7-city example of this problem. His paper generated enormous scientific and public interest, and kick-started the field of Biological Computing, the main subject of this discussion based seminar course. Students will analyze the Adleman paper, and the papers that preceded and followed it, with an eye for identifying the engineering and scientific aspects of each paper, emphasizing the interplay of these two approaches in the field of Biological Computing. This course is appropriate for both biology and non-biology majors. Care will be taken to fill in any knowledge gaps for both scientists and engineers.

Subject:
Biology
Life Science
Material Type:
Full Course
Textbook
Author:
Khodor, Julia
Date Added:
01/01/2005
Biological Engineering Design, Spring 2010
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This course illustrates how knowledge and principles of biology, biochemistry, and engineering are integrated to create new products for societal benefit. It uses a case study format to examine recently developed products of pharmaceutical and biotechnology industries: how a product evolves from initial idea, through patents, testing, evaluation, production, and marketing. Emphasizes scientific and engineering principles; the responsibility scientists, engineers, and business executives have for the consequences of their technology; and instruction and practice in written and oral communication. The topic focus of this class will vary from year to year. This version looks at inflammation underlying many diseases, specifically its role in cancer, diabetes, and cardiovascular disease.

Author:
White, Forest
Essigmann, John
Irvine, Darrell
Breindel, Harlan
Banuazizi, Atissa
Poe, Mya
Biological Engineering II: Instrumentation and Measurement, Fall 2006
Conditional Remix & Share Permitted
CC BY-NC-SA
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This course covers sensing and measurement for quantitative molecular/cell/tissue analysis, in terms of genetic, biochemical, and biophysical properties. Methods include light and fluorescence microscopies; electro-mechanical probes such as atomic force microscopy, laser and magnetic traps, and MEMS devices; and the application of statistics, probability and noise analysis to experimental data.

Subject:
Biology
Career and Technical Education
Electronic Technology
Life Science
Mathematics
Statistics and Probability
Material Type:
Full Course
Textbook
Author:
So, Peter
Date Added:
01/01/2006
Biological Engineering Programming, Spring 2006
Conditional Remix & Share Permitted
CC BY-NC-SA
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In this course problems from biological engineering are used to develop structured computer programming skills and explore the theory and practice of complex systems design and construction.

Subject:
Biology
Life Science
Material Type:
Full Course
Textbook
Author:
Endy, Andrew
Date Added:
01/01/2006
Biology
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Published by OpenStax College, Biology is designed for multi-semester biology courses for science majors. It is grounded on an evolutionary basis and includes features that highlight careers in the biological sciences and everyday applications of the concepts at hand. To meet the needs of today’s instructors and students, some content has been strategically condensed while maintaining the overall scope and coverage of traditional texts for this course. Instructors can customize the book, adapting it to the approach that works best in their classroom. Biology also includes an innovative art program that incorporates critical thinking and clicker questions to help students understand—and apply—key concepts.

Author:
Yael Avissar
Vladimir Jurukovski
Connie Rye
Jean DeSaix
Jung Choi
Robert Wise
Biology: Anatomy of a Muscle Cell
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This 17-minute video lesson looks at understanding the structure of a muscle cell. [Biology playlist: Lesson 50 of 71].

Author:
Khan, Salman
Biology: Anatomy of a Neuron
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This 6-minute video lesson provides an introduction to the neuron and its anatomy. [Biology playlist: Lesson 41 of 71].

Author:
Khan, Salman
Biology: Ape Clarification
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This 1-minute video lesson provides clarification on apes: they have no tails. [Biology playlist: Lesson 2 of 71].

Author:
Khan, Salman
Biology: Bacteria
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This 18-minute video lesson provides an introduction to bacteria. [Biology playlist: Lesson 18 of 71].

Author:
Khan, Salman
Biology: C-4 Photosynthesis
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This 17-minute video lesson looks at C-4 Photosynthesis: How some plants avoid photorespiration. [Biology playlist: Lesson 33 of 71].

Author:
Khan, Salman
Biology: CAM Plants
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This 9-minute video lesson looks at how CAM Plants are able to fix carbon at night so they don't have to keep their stomata open during the day. [Biology playlist: Lesson 34 of 71].

Author:
Khan, Salman
Biology: Cancer
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This 13-minute video lecture provides an introduction to what cancer is and how it is the by-product of broken DNA replication. [Biology playlist: Lesson 13 of 71].

Author:
Khan, Salman
Biology: Circulatory System and the Heart
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This 15-minute video lesson provides an introduction to the circulatory system and the heart. [Biology playlist: Lesson 39 of 71].

Author:
Khan, Salman
Biology: Cytotoxic T Cells
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This 10-minute video lesson discusses how cytotoxic T-Cells get activated by MHC-I/antigen complexes and then proceed to kill infected cells. [Biology playlist: Lesson 56 of 71].

Author:
Khan, Salman
Biology: DNA
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This 28-minute video lesson provides an introduction to DNA. [Biology playlist: Lesson 6 of 71].

Author:
Khan, Salman
Biology: Diffusion and Osmosis
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This 19-minute video lesson looks at diffusion and osmosis. [Biology playlist: Lesson 36 of 71].

Author:
Khan, Salman