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  • Biology
Brain Mechanisms for Hearing and Speech, Fall 2005
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An advanced course covering anatomical, physiological, behavioral, and computational studies of the central nervous system relevant to speech and hearing. Students learn primarily by discussions of scientific papers on topics of current interest. Recent topics include cell types and neural circuits in the auditory brainstem, organization and processing in the auditory cortex, auditory reflexes and descending systems, functional imaging of the human auditory system, quantitative methods for relating neural responses to behavior, speech motor control, cortical representation of language, and auditory learning in songbirds.

Author:
Delgutte, Bertrand
Brown, M. Christian
The Brain and Cognitive Sciences I, Fall 2002
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CC BY-NC-SA
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Survey of principles underlying the structure and function of the nervous system, integrating molecular, cellular, and systems approaches. Topics: development of the nervous system and its connections, cell biology or neurons, neurotransmitters and synaptic transmission, sensory systems of the brain, the neuroendocrine system, the motor system, higher cortical functions, behavioral and cellular analyses of learning and memory. First half of an intensive two-term survey of brain and behavioral studies for first-year graduate students. Open to graduate students in other departments, with permission of instructor.

Subject:
Biology
Life Science
Psychology
Social Science
Material Type:
Full Course
Textbook
Author:
Graybiel, Ann
Miller, Earl Keith
Wilson, Matt
Wilson, Matthew
Date Added:
01/01/2002
Brightening up Life: Harnessing the Power of Fluorescence Imaging to Observe Biology in Action, Fall 2006
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One summer in the 1960s a young Japanese researcher, with the help of a few high school students, chopped up ten thousand jellyfish. As a by-product of this harvest, they isolated a green fluorescent protein (GFP). Since then, GFP has triggered a revolution in our understanding of gene expression and signaling in live cells. In this seminar, we will examine how this small protein generates fluorescence, i.e. absorbs light of one wavelength and emits light of a longer wavelength. We will discuss how the color palette has been extended from green to blue, red and many other colors, based on protein engineering of GFP and the study of vividly colorful coral reefs. We will then investigate how these fluorescent proteins can be used to track the motion of DNA, RNA and protein in living cells, as well as to see waves of signaling molecules propagate across a cell. GFP is also a powerful tool for fluorescent imaging of whole organisms, from worms to mice, and we will see how it has been used in tracking the spread of cancer cells, controlling malaria and in understanding how neuronal connections form. In this seminar, we will explore this wonderful protein as well as other important methods and reagents for fluorescent imaging. This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.

Author:
Howarth, Mark
Brine Shrimp Inquiry
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This classroom lab is a guided practice for inquiry using brine shrimp as the subject to be investigated.

Author:
Diane Hoffman
Bse and Vcjd: their Biology and Management
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The furore surrounding the so-called"mad cow' diseases is an important and controversial episode of recent years. Although it peaked several years ago, the topic is still of great medical significance, influencing the way members of the public think about and experience science and scientists.

A Bug's Life: Under A Rock!
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This activity is a biology lab investigation where students create habitats to observe decomposers in a controlled setting.

Author:
Joan McKinnon
Cancer Biology
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This course will cover the origins of cancer and the genetic and cellular basis for cancer. It will examine the factors that have been implicated in triggering cancers; the intercellular interactions involved in cancer proliferation; current treatments for cancer and how these are designed; and future research and treatment directions for cancer therapy. Upon successful completion of this course, the student will be able to: explain how the perception of cancer and theories of its causes have changed throughout history because of important discoveries made by scientists, researchers, and physicians; summarize the importance of understanding cell biology in the study of cancer, its causes, it progression, and its treatment; outline the transcription and translation processes used to convert DNA into proteins and what changes occur that convert proto-oncogenes into oncogenes and lead to unchecked cell growth and cancer; compare and contrast the mechanisms by which activation of oncogenes, loss of tumor suppressors, loss of cell cycle checkpoints, and development of faulty DNA repair lead to cancer; describe the various cancer prevention mechanisms including risk assessment, screening, and lifestyle and environmental modification; list the past, current, and future cancer treatments and the mechanism by which these target cancer causing cells. (Biology 404)

Cancer Biology: From Basic Research to the Clinic, Fall 2004
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CC BY-NC-SA
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Seminar covering topics of current interest in biology. Includes reading and analysis of research papers and student presentations. Contact Biology Education Office for topics. This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. In 1971, President Nixon declared the "War on Cancer," but after three decades the war is still raging. How much progress have we made toward winning the war and what are we doing to improve the fight? Understanding the molecular and cellular events involved in tumor formation, progression, and metastasis is crucial to the development of innovative therapy for cancer patients. Insights into these processes have been gleaned through basic research using biochemical, molecular, and genetic analyses in yeast, C. elegans, mice, and cell culture models. We will explore the laboratory tools and techniques used to perform cancer research, major discoveries in cancer biology, and the medical implications of these breakthroughs. A focus of the class will be critical analysis of the primary literature to foster understanding of the strengths and limitations of various approaches to cancer research. Special attention will be made to the clinical implications of cancer research performed in model organisms and the prospects for ending the battle with this devastating disease.

Subject:
Biology
Life Science
Material Type:
Full Course
Textbook
Author:
Haigis, Kevin
Kim, Carla
Date Added:
01/01/2004
Career Options for Biomedical Research, Fall 2006
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CC BY-NC-SA
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This course has been designed as a seminar to give students an understanding of how scientists with medical or scientific degrees conduct research in both hospital and academic settings. There will be interactive discussions with research clinicians and scientists about the career opportunities and research challenges in the biomedical field, which an MIT student might prepare for by obtaining an MD, PhD, or combined degrees. The seminar will be held in a case presentation format, with topics chosen from the radiological sciences, including current research in magnetic resonance imaging, positron emission tomography and other nuclear imaging techniques, and advances in radiation therapy. With the lectures as background, we will also examine alternative and related options such as biomedical engineering, medical physics, and medical engineering. We'll use as examples and points of comparisons the curriculum paths available through MIT's Department of Nuclear Science and Engineering. In past years we have given very modest assignments such as readings in advance of or after a seminar, and a short term project.

Subject:
Biology
Life Science
Material Type:
Full Course
Textbook
Author:
Yip, Sidney
Date Added:
01/01/2006
The Case of the Crying Baby: Surgical vs. Medical Management
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The parents of a six-week-old baby girl know there is something seriously wrong with their child, but it takes a number of frustrating visits to the pediatrician before they finally get a correct diagnosis. Once they do, the parents must decide whether they want to seek a surgical solution or rely on a course of medical treatment for their daughter. Best suited for classes in pharmacology, nursing, or medicine, this case could also be used in a basic biology or anatomy course.

Author:
Kari A. Mergenhagen
Cell Biology
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This course will present the student with a detailed overview of a cell's main components and functions. The course is roughly organized into four major areas: the cell membrane, cell nucleus, cell cycle, and cell interior. The student will approach most of these topics straightforwardly, from a molecular and structural point of view. Upon completion of this course, the student will be able to: explain what a eukaryotic cell is, identify the components of the cell, and describe how a cell functions; explain how cell membranes are formed; identify the general mechanisms of transport across cell membranes; list the different ways in which cells communicate with one another--specifically, via signaling pathways; define what the extracellular matrix is composed of in different cells and how the extracellular matrix is involved in forming structures in specific tissues; list the components of the cell's cytoskeleton and explain how the cytoskeleton is formed and how it directs cell movements; explain the fundamentals of gene expression and describe how gene expression is regulated at the protein level; define and explain the major cellular events involved in mitosis and cytokinesis; identify the major cellular events that occur during meiosis; describe the eukaryotic cell cycle and identify the events that need to occur during each phase of the cell cycle; identify all of the major organelles in eukaryotic cells and their respective major functions. (Biology 301)

Cell Biology, Spring 2007
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Biology of cells of higher organisms: structure, function, and biosynthesis of cellular membranes and organelles; cell growth and oncogenic transformation; transport, receptors and cell signaling; the cytoskeleton, the extracellular matrix, and cell movements; chromatin structure and RNA synthesis.

Subject:
Biology
Life Science
Material Type:
Full Course
Textbook
Author:
Orr-Weaver, Terry
Date Added:
01/01/2007
Cell Biology: Structure and Functions of the Nucleus, Spring 2010
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The goal of this course is to teach both the fundamentals of nuclear cell biology as well as the methodological and experimental approaches upon which they are based. Lectures and class discussions will cover the background and fundamental findings in a particular area of nuclear cell biology. The assigned readings will provide concrete examples of the experimental approaches and logic used to establish these findings. Some examples of topics include genome and systems biology, transcription, and gene expression.

Author:
Sharp, Phillip
Young, Richard
Cell Celebration!
Read the Fine Print
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In this lesson, the students look at the components of cells and their functions. The lesson focuses on the difference between prokaryotic and eukaryotic cells. Each part of the cell performs a specific function that is vital for the cell's survival. Bacteria are single-celled organisms that are very important to engineers. Engineers can use bacteria to break down toxic materials in a process called bioremediation, and they can also kill or disable harmful bacteria through disinfection.

Subject:
Applied Science
Biology
Engineering
Life Science
Material Type:
Activity/Lab
Lesson Plan
Author:
Glen Sirakavit
Integrated Teaching and Learning Program,
Janet Yowell
Kaelin Cawley
Malinda Schaefer Zarske
Date Added:
09/18/2014
Cell Membrane Color Sheet and Build a Cell Membrane
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Students color-code a schematic of a cell and its cell membrane structures. Then they complete the "Build-a-Membrane" activity found at http://learn.genetics.utah.edu. This reinforces their understanding of the structure and function of animal cells, and shows them the importance of being able to construct a tangible model of something that is otherwise difficult to see.

Author:
VU Bioengineering RET Program,
Melinda M. Higgins
Amber Spolarich
Cell Membrane Structure and Function
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Students learn about the different structures that comprise cell membranes, fulfilling part of the Research and Revise stages of the legacy cycle. They view online animations of cell membrane dynamics (links provided). Then they observe three teacher demonstrations that illustrate diffusion and osmosis concepts, as well as the effect of movement through a semi-permeable membrane using Lugol's solution.

Author:
VU Bioengineering RET Program,
Melinda M. Higgins
Amber Spolarich
Cell and Molecular Biology: What We Know & How We Found Out
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Like most introductory science textbooks, this one opens with a discussion of scientific method. A key feature is its focus on experimental support for what we know about cell and molecular biology. Understanding how science is practiced and how investigators think about experimental results is essential to understanding the relationship of cell structure and function…, not to mention our relationship to the natural world. This is a free Open Education Resource (OER), covered by a Creative Commons CCBY license (check out the Preface!). Every chapter begins with learning objectives and links to relevant recorded lectures. As used by the author, the iText engages students with embedded “just-in-time” learning tools. These include instructor’s annotations (comments) directing students to animations or text of interest, as well as links to writing assignments and quizzes. These interactive features aim to strengthen critical thinking and writing skills necessary to understand cell and molecular biology, not to mention science as a way of thinking in general. Please excuse the marketing terms, but you can choose between Bronze, Silver, or Gold versions, reflecting increasing potential for student interaction with the iText. Download your choice of the iText or the sample chapter at one of the links below.

Author:
Gerald Bergtrom
Cell and Molecular Neurobiology, Spring 2008
Conditional Remix & Share Permitted
CC BY-NC-SA
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Subject covers all major areas of cellular and molecular neurobiology including excitable cells and membranes, ion channels and receptors, synaptic transmission, cell type determination, axon guidance and targeting, neuronal cell biology, synapse formation and plasticity. Includes lectures and exams, and involves presentation and discussion of primary literature. Focus on major concepts and recent advances in experimental neuroscience.

Subject:
Biology
Life Science
Material Type:
Full Course
Textbook
Author:
Constantine-Paton, Martha
Sheng, Morgan
Date Added:
01/01/2008